GenAp Pipes User manual

Bioinformatics pipelines developed at the McGill University and Génome Québec Innovation Centre (MUGQIC), as part of the GenAP project, are available for public use. They include a wide array of pipelines, including RNA-Seq, ChIP-Seq, WGS, exome sequencing, Bisulfite sequencing, Hi-C and metagenomcis. This document explains how to use the pipelines using Hi-C analysis pipeline and the ChIP-Seq pipeline, as examples. Getting Started

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